Windows 2000 keeps an alternate copy of the registry hives (.ALT) and attempts to switch to it when corruption is detected.[15] Windows XP and Windows Server 2003 do not maintain a System.alt hive because NTLDR on those versions of Windows can process the System.log file to bring up to date a System hive that has become inconsistent during a shutdown or crash. In addition, the %SystemRoot%\Repair folder contains a copy of the system's registry hives that were created after installation and the first successful startup of Windows.

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Windows 98 and Windows ME include command line (Scanreg.exe) and GUI (Scanregw.exe) registry checker tools to check and fix the integrity of the registry, create up to five automatic regular backups by default and restore them manually or whenever corruption is detected.[40] The registry checker tool backs up the registry, by default, to %Windir%\Sysbckup Scanreg.exe can also run from MS-DOS.[41]
Individual settings for users on a system are stored in a hive (disk file) per user. During user login, the system loads the user hive under the HKEY_USERS key and sets the HKCU (HKEY_CURRENT_USER) symbolic reference to point to the current user. This allows applications to store/retrieve settings for the current user implicitly under the HKCU key. 

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